Variant Call Format File Examples

Owned by Tim Carver
Last updated: Feb 05, 2020
2 min read
  1. 'sample_BCAC_313_genotypes.vcf' - A sample file for the BCAC 313 variant PRS using genotypes only, with samples 'Low', 'Med', 'Mod' and 'High' corresponding to roughly 5%, 50%, 75% and 95% PRS percentiles respectively.      




  2. 'sample_BCAC_313_dosages.vcf' - A sample file for the BCAC 313 variant PRS using a combination of genotypes and dosages, with samples 'Low', 'Med', 'Mod' and 'High' corresponding to roughly 5%, 50%, 75% and 95% PRS percentiles respectively.




  3. 'sample_BCAC_313.vcf' - A sample file for the BCAC 313 variant PRS using a combination of genotypes and dosages, with samples '0.01', '0.025', '0.05', '0.1', '0.2', '0.3', '0.4', '0.5', '0.6', '0.7', '0.8', '0.9', '0.95', '0.975', '0.99' corresponding to roughly 1%, 2.5%, 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 97.5% and 99% PRS percentiles respectively.