alpha = 0.439
Chromosome,Position,Reference_Allele,Effect_Allele,Effect_Allele_Frequency,Log_Odds_Ratio
1,7917076,G,A,0.3911,-0.0409
1,10566215,A,G,0.3291,-0.0586
1,18807339,T,C,0.5105,-0.0564
1,41380440,C,T,0.6471,0.0426
1,41389220,T,C,0.0174,0.155
1,46670206,TC,T,0.3023,0.0447
1,51467096,CT,C,0.4856,0.0374
1,88156923,G,A,0.1544,0.0494
1,88428199,C,A,0.2478,-0.0387
1,100880328,A,T,0.41,0.0373
1,110198129,CAAA,C,0.7779,0.0458
1,114448389,C,T,0.1673,0.0621
1,118141492,A,C,0.2654,0.0452
1,120257110,T,C,0.5316,0.0385
1,121280613,A,G,0.4078,0.0881
1,121238279,A,G,0.1067,-0.0673
1,145604302,C,CT,0.349,-0.0399
1,149906413,T,C,0.4059,0.0548
1,155556971,G,A,0.23,0.0499
1,168171052,CA,C,0.1092,-0.068
1,172328767,T,TA,0.3264,-0.0435
1,201437832,C,T,0.0552,0.0917
1,202184600,C,T,0.4008,-0.0065
1,203770448,T,A,0.2734,0.0498
1,204502514,T,TTCTGAAACAGGG,0.7983,-0.0321
1,208076291,G,A,0.3364,-0.0366
1,217053815,T,G,0.3268,0.0417
1,217220574,G,A,0.2103,-0.044
1,220671050,C,T,0.2414,0.0418
1,242034263,A,G,0.0315,0.1428
2,19315675,T,A,0.5633,-0.0331
2,25129473,A,G,0.4122,-0.0427
2,29179452,G,C,0.2281,-0.0066
2,29615233,T,C,0.2559,-0.0427
2,39699510,C,CT,0.4647,-0.0402
2,70172587,G,A,0.277,-0.0412
2,88358825,G,C,0.3122,0.0473
2,121058254,A,G,0.7023,-0.0334
2,121089731,T,C,0.195,-0.0427
2,121159205,G,A,0.3574,-0.044
2,121246568,T,C,0.897,0.0992
2,172974566,C,G,0.4722,-0.0473
2,174212910,A,G,0.8442,0.0593
2,192381934,C,T,0.8641,0.0316
2,202204741,T,C,0.7223,-0.0492
2,217920769,G,T,0.5027,-0.1318
2,217955896,GA,G,0.0364,-0.2016
2,218292158,C,G,0.7289,-0.0757
2,218714845,G,A,0.39,-0.0431
2,241388857,C,A,0.9759,-0.1232
3,4742251,A,G,0.3865,0.0616
3,27353716,C,A,0.5236,0.0748
3,27388664,C,G,0.2708,0.0502
3,29294845,C,T,0.016,-0.1281
3,30684907,C,T,0.2962,0.0592
3,46888198,T,C,0.1063,-0.0806
3,49709912,C,CT,0.2847,-0.0367
3,55970777,A,AT,0.0307,-0.1195
3,59373745,C,T,0.4281,-0.0394
3,63887449,T,TTG,0.1326,0.0648
3,71620370,T,G,0.6428,-0.0374
3,87037543,A,G,0.0916,-0.0723
3,99403877,G,A,0.4843,-0.0376
3,141112859,CTT,C,0.4205,0.0551
3,172285237,G,A,0.2127,0.0422
3,189774456,C,T,0.2187,-0.0478
4,38784633,G,T,0.2502,0.0489
4,84370124,TAA,TA,0.5353,-0.0464
4,89240476,G,A,0.4422,0.0352
4,92596232,G,A,0.4662,-0.0407
4,106069013,G,T,0.2286,0.0471
4,143467195,C,T,0.1106,-0.0569
4,151218296,CATATTT,C,0.6519,0.0388
4,175842495,G,A,0.1179,-0.0898
4,175847436,C,A,0.3424,0.0348
4,187503758,A,T,0.4503,0.0357
5,345109,T,C,0.0553,0.084
5,1279790,C,T,0.2575,0.0617
5,1296255,A,AG,0.3084,-0.0549
5,1353077,T,C,0.0129,0.1552
5,2777029,G,A,0.4168,0.0391
5,16231194,G,C,0.556,-0.0426
5,32579616,TCA,T,0.485,0.0363
5,44508264,G,GT,0.125,-0.1177
5,44619502,A,G,0.1561,-0.1101
5,44649944,C,T,0.5992,0.0492
5,44706498,A,G,0.2446,0.0497
5,44853593,G,C,0.3103,-0.0336
5,52679539,C,CA,0.1001,0.0571
5,55662540,C,CT,0.3657,-0.0458
5,55965167,C,T,0.5602,0.0394
5,56023083,T,G,0.1586,0.1366
5,56042972,C,T,0.0532,0.0865
5,56045081,T,C,0.1639,-0.0564
5,73234583,T,C,0.3192,-0.0363
5,77155397,GT,G,0.3476,-0.0408
5,79180995,G,GA,0.1758,0.0328
5,81512947,TA,T,0.2484,-0.0598
5,90789470,G,A,0.1578,-0.0564
5,104300273,G,T,0.1743,-0.0487
5,122478676,C,A,0.743,-0.0386
5,122705244,C,T,0.0286,0.0944
5,131640536,A,G,0.5477,0.0392
5,132405885,A,T,0.2446,-0.0388
5,158244083,C,T,0.5675,-0.0677
5,169591460,T,C,0.3393,0.0412
5,173358154,G,A,0.4156,0.0365
5,176134882,T,C,0.5462,0.0363
6,13713366,G,C,0.5671,-0.0553
6,16399557,C,T,0.3313,-0.0373
6,18783140,G,A,0.6213,0.0326
6,20537845,CA,C,0.4741,-0.0391
6,21923810,T,C,0.4321,-0.0321
6,27425644,G,C,0.0825,-0.0737
6,43227141,G,A,0.0964,-0.064
6,85912194,CAA,C,0.0621,0.0762
6,87803819,T,C,0.2809,0.0383
6,130341728,C,CT,0.7113,0.0472
6,149595505,T,C,0.206,-0.0476
6,151949806,A,C,0.3091,0.0703
6,151955914,A,G,0.0726,0.1449
6,152022664,CAAAAAAA,C,0.613,0.0137
6,152023191,G,A,0.3938,0.0626
6,152055978,A,T,0.0622,0.074
6,152432902,C,T,0.5114,0.0649
6,169006947,C,G,0.5186,-0.0308
6,170332621,T,C,0.6183,0.0373
7,21940960,A,G,0.3531,-0.0467
7,25569548,C,T,0.1647,-0.0486
7,28869017,G,A,0.1069,-0.0572
7,55192256,A,C,0.5492,-0.0349
7,91459189,A,ATT,0.3332,0.0452
7,94113799,T,C,0.2819,0.0449
7,98005235,G,A,0.1618,-0.0467
7,99948655,T,G,0.2083,0.042
7,101552440,G,A,0.1281,-0.0568
7,102481842,T,C,0.3429,0.0418
7,130656911,C,T,0.3747,-0.0476
7,130674481,G,A,0.2971,0.0416
7,139943702,CT,C,0.5378,0.0582
7,144048902,G,T,0.2289,-0.0563
8,170692,T,C,0.2236,0.0477
8,17787610,CT,C,0.6217,-0.0377
8,23447496,A,G,0.6431,-0.0389
8,23663653,C,A,0.4048,0.0335
8,29509616,A,C,0.6758,-0.0601
8,36858483,A,G,0.1773,-0.076
8,76230943,A,G,0.8289,0.0755
8,76333056,C,T,0.0878,0.1129
8,76378165,G,T,0.3562,-0.0391
8,102483100,T,C,0.0954,0.0593
8,106358620,A,T,0.1014,-0.0745
8,117209548,A,G,0.6468,-0.0417
8,120862186,A,G,0.1342,0.0527
8,124563705,T,C,0.1467,0.0477
8,124571581,G,A,0.4177,0.034
8,124739913,T,G,0.4046,0.0466
8,128213561,C,CA,0.4183,-0.043
8,128370949,C,G,0.4025,0.0642
8,128372172,A,G,0.5422,0.0597
8,129199566,G,A,0.1719,0.0615
8,143669254,A,G,0.3333,-0.0346
9,6880263,A,G,0.29,0.0348
9,21964882,CAAAA,C,0.321,0.055
9,22041998,C,G,0.137,0.0289
9,36928288,T,C,0.5427,0.0249
9,87782211,T,C,0.5174,0.0361
9,98362587,T,C,0.0928,0.0576
9,110303808,TAA,T,0.2032,0.0797
9,110837073,A,G,0.0627,0.1158
9,110837176,C,T,0.1757,0.0653
9,110849525,G,T,0.5942,0.0153
9,110885479,C,T,0.6183,0.0877
9,119313486,A,G,0.409,-0.0462
9,129424719,A,G,0.4583,-0.0382
9,136146597,C,T,0.271,0.04
10,5794652,A,G,0.2169,0.047
10,13892298,G,A,0.4415,0.0371
10,22032942,A,G,0.7104,-0.058
10,22477776,ACC,A,0.0214,0.1687
10,22861490,A,C,0.9398,0.0875
10,38523626,C,A,0.374,0.0404
10,64299890,A,G,0.1541,-0.1345
10,64819996,G,T,0.1988,0.0472
10,71335574,C,T,0.3122,-0.0404
10,80851257,G,T,0.6117,-0.0805
10,80886726,A,G,0.1617,0.0762
10,95292187,CAA,C,0.8177,-0.0512
10,114777670,C,T,0.4646,0.0472
10,115128491,T,C,0.7873,-0.0592
10,123095209,G,A,0.3246,-0.0538
10,123340107,A,G,0.0643,0.1508
10,123340431,GC,G,0.5971,-0.2408
10,123349324,A,T,0.0475,-0.2609
11,433617,T,C,0.794,-0.0437
11,803017,A,G,0.5185,0.0457
11,1895708,C,A,0.3918,-0.0762
11,18664241,T,G,0.7344,0.0461
11,42844441,C,T,0.3256,-0.0336
11,44368892,G,A,0.5492,0.0374
11,46318032,C,G,0.0647,-0.0748
11,65553492,C,A,0.1865,0.0425
11,65571855,A,G,0.4857,-0.0347
11,69328130,A,T,0.2143,-0.0423
11,69330983,G,A,0.1231,0.1022
11,69331418,C,T,0.0745,0.1782
11,108288808,G,T,0.4196,-0.0022
11,111696440,T,C,0.6232,-0.0396
11,116727936,A,T,0.1973,-0.0423
11,122966626,A,G,0.2896,-0.0383
11,129243417,T,G,0.8589,-0.0543
11,129461016,A,G,0.5959,0.0453
12,103097887,C,T,0.1168,0.0546
12,111600134,G,T,0.3668,-0.0442
12,115108136,T,C,0.2609,0.0465
12,115796577,A,G,0.1968,-0.0428
12,115835836,T,C,0.4194,-0.0813
12,120832146,C,T,0.1582,0.0516
12,14413931,G,C,0.2602,0.0484
12,28149568,C,T,0.1191,-0.062
12,28174817,C,T,0.244,-0.0856
12,28347382,C,T,0.2151,-0.0521
12,29140260,G,A,0.9124,0.0647
12,57146069,T,G,0.1025,-0.0579
12,70798355,A,T,0.1834,0.0469
12,83064195,G,GA,0.0986,0.0671
12,85004551,C,T,0.4999,0.0348
12,96027759,A,G,0.3,-0.0867
13,32839990,G,A,0.0185,0.0424
13,32972626,A,T,0.009,0.2687
13,43501356,A,G,0.8307,0.0517
13,73806982,T,C,0.3124,0.0345
13,73960952,A,G,0.7619,0.0399
14,37128564,C,A,0.2109,-0.0733
14,37228504,C,T,0.4394,0.039
14,68660428,T,C,0.8366,-0.0474
14,68979835,T,C,0.262,-0.0911
14,91751788,TC,T,0.6936,0.038
14,91841069,A,G,0.3491,0.0513
14,93070286,C,T,0.1735,-0.0577
14,105213978,T,G,0.458,0.0399
15,46678227,C,T,0.0133,-0.1973
15,50694306,A,G,0.3372,-0.0417
15,66630569,G,A,0.6402,-0.0369
15,67457698,A,G,0.0508,0.0782
15,75750969,G,A,0.2609,-0.0413
15,91512267,G,T,0.1361,-0.0589
15,100905819,A,C,0.1072,-0.0608
16,4008542,CAAAAA,C,0.8194,-0.0329
16,4106788,C,A,0.2665,-0.03
16,6963972,C,G,0.7915,0.0354
16,10706580,G,A,0.0669,-0.074
16,23007047,G,T,0.0242,0.1218
16,52538825,C,A,0.254,0.1147
16,52599188,C,T,0.2396,0.107
16,53809123,C,T,0.4163,-0.0704
16,53861139,C,T,0.7653,-0.0338
16,53861592,G,A,0.3713,-0.0337
16,54682064,G,A,0.4885,0.0477
16,80648296,A,G,0.2313,0.0839
16,85145977,T,C,0.4851,-0.0211
16,87086492,T,C,0.2581,-0.0469
17,29168077,G,T,0.2573,-0.0568
17,39251123,T,C,0.0667,0.0799
17,40127060,T,C,0.0574,0.0174
17,40485239,G,T,0.087,-0.0571
17,40744470,G,A,0.0127,0.2017
17,43212339,C,CT,0.2273,0.0438
17,44283858,G,A,0.1919,-0.054
17,53205917,A,G,0.2994,-0.0793
17,77781725,A,G,0.5075,-0.0401
18,11696613,C,T,0.1361,-0.0381
18,20634253,C,T,0.6378,-0.0415
18,24125857,T,C,0.4243,0.0346
18,24337424,C,G,0.623,0.0455
18,24518050,AT,A,0.2757,-0.0599
18,25407513,C,G,0.7135,0.0399
18,29981526,G,A,0.0458,-0.1058
18,42411803,G,C,0.0742,-0.0877
18,42888797,T,C,0.3506,-0.0542
19,13249921,G,T,0.0522,0.0956
19,17393925,C,A,0.2935,0.0378
19,18569492,C,T,0.3511,-0.0719
19,19517054,C,CGGGCG,0.3525,0.0437
19,44283031,T,C,0.3525,0.0619
19,46166073,T,C,0.604,-0.036
19,55816678,C,T,0.3649,-0.0359
20,5948227,G,A,0.0647,0.076
20,11379842,T,C,0.9498,0.0844
20,41613706,C,G,0.794,0.0315
20,52296849,G,A,0.2422,0.044
21,16364756,T,G,0.1756,0.0646
21,16566350,A,G,0.0865,0.0595
21,16574455,C,A,0.3182,-0.0707
21,47762932,G,A,0.0353,0.0946
22,19766137,C,T,0.3803,-0.0367
22,29121087,A,G,0.004,0.1839
22,29135543,G,A,0.0828,0.0654
22,29203724,C,T,0.0206,0.1405
22,29613520,A,C,0.987,-0.1716
22,38583315,AAAAG,AAAAGAAAG,0.2819,-0.0471
22,39343916,T,A,0.2512,0.0407
22,40904707,CT,C,0.1068,0.1148
22,43433100,C,T,0.1135,-0.06
22,45320209,G,A,0.4132,-0.0134
22,46283297,G,A,0.1122,0.0736